Detection of Atrial Fibrillation Using Decision Tree Ensemble

2017 PhysioNet/CinC Challenge proposed a global competition for classifying a short single ECG lead recording into normal sinus rhythm, atrial fibrillation (AF), alternative rhythm, and unclassified rhythm. This study developed and evaluated a pragmatic approach to solve the challenge, which was based on a decision tree ensemble with 30 features from ECG recording. The model was trained using the AdaBoost.M2 algorithm. The results reported here were obtained using 100-fold cross-validation, and the lowest MSE was 0.12 with the maximum number of splits of 55, and the number of trees of 20. The entry was tested and scored in the second phase of the challenge. The achieved scores for "Normal", "AF", "Other", were 0.93, 0.86, and 0.79, respectively, while the F1 measure was 0.86, and the official overall score was 0.82

A Remote Health Monitoring System for the Elderly Based on Smart Home Gateway

This paper proposed a remote health monitoring system for the elderly based on smart home gateway. The proposed system consists of three parts: the smart clothing, the smart home gateway, and the health care server. The smart clothing collects the elderly’s electrocardiogram (ECG) and motion signals. The home gateway is used for data transmission. The health care server provides services of data storage and user information management; it is constructed on the Windows-Apache-MySQL-PHP (WAMP) platform and is tested on the Ali Cloud platform. To resolve the issues of data overload and network congestion of the home gateway, an ECG compression algorithm is applied. System demonstration shows that the ECG signals and motion signals of the elderly can be monitored. Evaluation of the compression algorithm shows that it has a high compression ratio and low distortion and consumes little time, which is suitable for home gateways. The proposed system has good scalability, and it is simple to operate. It has the potential to provide long-term and continuous home health monitoring services for the elderly

Automatic Liver Segmentation on Volumetric CT Images Using Supervoxel-Based Graph Cuts

Accurate segmentation of liver from abdominal CT scans is critical for computer-assisted diagnosis and therapy. Despite many years of research, automatic liver segmentation remains a challenging task. In this paper, a novel method was proposed for automatic delineation of liver on CT volume images using supervoxel-based graph cuts. To extract the liver volume of interest (VOI), the region of abdomen was firstly determined based on maximum intensity projection (MIP) and thresholding methods. Then, the patient-specific liver VOI was extracted from the region of abdomen by using a histogram-based adaptive thresholding method and morphological operations. The supervoxels of the liver VOI were generated using the simple linear iterative clustering (SLIC) method. The foreground/background seeds for graph cuts were generated on the largest liver slice, and the graph cuts algorithm was applied to the VOI supervoxels. Thirty abdominal CT images were used to evaluate the accuracy and efficiency of the proposed algorithm. Experimental results show that the proposed method can detect the liver accurately with significant reduction of processing time, especially when dealing with diseased liver cases

An Improved FastICA Method for Fetal ECG Extraction

Objective. The fast fixed-point algorithm for independent component analysis (FastICA) has been widely used in fetal electrocardiogram (ECG) extraction. However, the FastICA algorithm is sensitive to the initial weight vector, which affects the convergence of the algorithm. In order to solve this problem, an improved FastICA method was proposed to extract fetal ECG. Methods. First, the maternal abdominal mixed signal was centralized and whitened, and the overrelaxation factor was incorporated into Newton’s iterative algorithm to process the initial weight vector randomly generated. The improved FastICA algorithm was used to separate the source components, selected the best maternal ECG from the separated source components, and detected the R-wave location of the maternal ECG. Finally, the maternal ECG component in each channel was removed by the singular value decomposition (SVD) method to obtain a clean fetal ECG signal. Results. An annotated clinical fetal ECG database was used to evaluate the improved algorithm and the conventional FastICA algorithm. The average number of iterations of the algorithm was reduced from 35 before the improvement to 13. Correspondingly, the average running time was reduced from 1.25 s to 1.04 s when using the improved algorithm. The signal-to-noise ratio (SNR) based on eigenvalues of the improved algorithm was 1.55, as compared to 0.99 of the conventional FastICA algorithm. The SNR based on cross-correlation coefficients of the conventional algorithm was also improved from 0.59 to 2.02. The sensitivity, positive predictive accuracy, and harmonic mean (F1) of the improved method were 99.37%, 99.00%, and 99.19%, respectively, while these metrics of the conventional FastICA method were 99.03%, 98.53%, and 98.78%, respectively. Conclusions. The proposed improved FastICA algorithm based on the overrelaxation factor, while maintaining the rate of convergence, relaxes the requirement of initial weight vector, avoids the unbalanced convergence, reduces the number of iterations, and improves the convergence performance

Effects of Patchwise Sampling Strategy to Three-Dimensional Convolutional Neural Network-Based Alzheimer’s Disease Classification

In recent years, the rapid development of artificial intelligence has promoted the widespread application of convolutional neural networks (CNNs) in neuroimaging analysis. Although three-dimensional (3D) CNNs can utilize the spatial information in 3D volumes, there are still some challenges related to high-dimensional features and potential overfitting issues. To overcome these problems, patch-based CNNs have been used, which are beneficial for model generalization. However, it is unclear how the choice of a patchwise sampling strategy affects the performance of the Alzheimer’s Disease (AD) classification. To this end, the present work investigates the impact of a patchwise sampling strategy for 3D CNN based AD classification. A 3D framework cascaded by two-stage subnetworks was used for AD classification. The patch-level subnetworks learned feature representations from local image patches, and the subject-level subnetwork combined discriminative feature representations from all patch-level subnetworks to generate a classification score at the subject level. Experiments were conducted to determine the effect of patch partitioning methods, the effect of patch size, and interactions between patch size and training set size for AD classification. With the same data size and identical network structure, the 3D CNN model trained with 48 × 48 × 48 cubic image patches showed the best performance in AD classification (ACC = 89.6%). The model trained with hippocampus-centered, region of interest (ROI)-based image patches showed suboptimal performance. If the pathological features are concentrated only in some regions affected by the disease, the empirically predefined ROI patches might be the right choice. The better performance of cubic image patches compared with cuboidal image patches is likely related to the pathological distribution of AD. The image patch size and training sample size together have a complex influence on the performance of the classification. The size of the image patches should be determined based on the size of the training sample to compensate for noisy labels and the problem of the curse of dimensionality. The conclusions of the present study can serve as a reference for the researchers who wish to develop a superior 3D patch-based CNN model with an appropriate patch sampling strategy

3D Liver Tumor Segmentation in CT Images Using Improved Fuzzy C-Means and Graph Cuts

Three-dimensional (3D) liver tumor segmentation from Computed Tomography (CT) images is a prerequisite for computer-aided diagnosis, treatment planning, and monitoring of liver cancer. Despite many years of research, 3D liver tumor segmentation remains a challenging task. In this paper, an efficient semiautomatic method was proposed for liver tumor segmentation in CT volumes based on improved fuzzy C-means (FCM) and graph cuts. With a single seed point, the tumor volume of interest (VOI) was extracted using confidence connected region growing algorithm to reduce computational cost. Then, initial foreground/background regions were labeled automatically, and a kernelized FCM with spatial information was incorporated in graph cuts segmentation to increase segmentation accuracy. The proposed method was evaluated on the public clinical dataset (3Dircadb), which included 15 CT volumes consisting of various sizes of liver tumors. We achieved an average volumetric overlap error (VOE) of 29.04% and Dice similarity coefficient (DICE) of 0.83, with an average processing time of 45 s per tumor. The experimental results showed that the proposed method was accurate for 3D liver tumor segmentation with a reduction of processing time

Understanding the role of APOE Gene Polymorphisms in Minimal Atrophy Alzheimer’s Disease by mixture of expert models

Alzheimer’s disease (AD) is a heterogeneous disease. Exploring the characteristics of each AD subtype is the key to disentangling the heterogeneity. Minimal atrophy AD (MAD) is a common AD subtype that yields conflicting results. In order to evaluate this aspect across relatively large heterogeneous AD populations, a total of 192 AD and 228 cognitively normal (CN) subjects were processed by the automated segmentation scheme FreeSurfer, which generates regional cortical thickness measures. A machine learning driven approach, the mixture of expert models, which combines unsupervised modeling of mixtures of distributions with supervised learning of classifiers, was applied to approximates the non-linear boundary between AD and CN subjects with a piece-wise linear boundary. Multiple cortical thicknes patterns of AD were discovered, which includes: bilateral parietal/frontal atrophy AD, left temporal dominant atrophy AD, MAD, and diffuse atrophy AD. MAD had the highest proportions of ApoE4 and ApoE2. Further analysis revealed that ApoE genotype, disease stage and their interactions can partially explain the conflicting observations in MAD

Multiple Subtypes of Alzheimer’s Disease Base on Brain Atrophy Pattern

Alzheimer’s disease (AD) is a disease of a heterogeneous nature, which can be disentangled by exploring the characteristics of each AD subtype in the brain structure, neuropathology, and cognition. In this study, a total of 192 AD and 228 cognitively normal (CN) subjects were obtained from the Alzheimer’s disease Neuroimaging Initiative database. Based on the cortical thickness patterns, the mixture of experts method (MOE) was applied to the implicit model spectrum of transforms lined with each AD subtype, then their neuropsychological and neuropathological characteristics were analyzed. Furthermore, the piecewise linear classifiers composed of each AD subtype and CN were resolved, and each subtype was comprehensively explained. The following four distinct AD subtypes were discovered: bilateral parietal, frontal, and temporal atrophy AD subtype (occipital sparing AD subtype (OSAD), 29.2%), left temporal dominant atrophy AD subtype (LTAD, 22.4%), minimal atrophy AD subtype (MAD, 16.1%), and diffuse atrophy AD subtype (DAD, 32.3%). These four subtypes display their own characteristics in atrophy pattern, cognition, and neuropathology. Compared with the previous studies, our study found that some AD subjects showed obvious asymmetrical atrophy in left lateral temporal-parietal cortex, OSAD presented the worst cerebrospinal fluid levels, and MAD had the highest proportions of APOE ε4 and APOE ε2. The subtype characteristics were further revealed from the aspect of the model, making it easier for clinicians to understand. The results offer an effective support for individual diagnosis and prognosis